Elongation Factor 1-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor 1-Alpha
  Conformer 1
(PDB) 		1jny (A)
  Conformer 2
(PDB) 		1f60 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 208 2.39   6 - 225   227 - 227
2 201 1.22   226 - 226   228 - 427

Sequence


           ________________________________________________________________________________________________________________________ 
 1jny(A) : ***KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE-----------mRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG 
         :                                                                                                                          
 1f60(A) : GKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________________________225___ 
 1jny(A) : EYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG------------PTLEEYLDQLELPPKP 
         :                                                                                                                          
 1f60(A) : EFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVK--WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP 
           __________________________________________________________________________________________________________________236___ 

           ________________________________________________________________________________________________________________________ 
 1jny(A) : VDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHP-NNPPTVADEFTARIIVVWHPTALANGYTPVL 
         :                                                                                                                          
 1f60(A) : TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVL 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________                                       
 1jny(A) : HVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKP                                       
         :                                                                                                                          
 1f60(A) : DCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDK                                       
           __________________________________________________________________________________                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		71.1
Translation
(A) 		-0.5
Closure
(%) 		82.5
Bending Residues
( green ) 		  225 - 228
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Chart image not calculated - the graph is too big to count connection types.

PyMOL Script

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