Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1aip (A)
  Conformer 2
(PDB)
1exm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 2.96   95 - 98   217 - 403
2 178 2.34   11 - 94   99 - 216

Sequence


           ______________________________________________________________________________82________________________________________ 
 1aip(A) : ******KPHVNVGTIGHVDHGKTTLTAALTYVTAAENP------------------------tAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
         :                                                                                                                          
 1exm(A) : GEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 
           ______________________________________________________________________________82________________________________________ 

           _________________________________________________________________________________________214____________________________ 
 1aip(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
         :                                                                                                                          
 1exm(A) : ARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 
           _________________________________________________________________________________________214____________________________ 

           ________________________________________________________________________________________________________________________ 
 1aip(A) : ERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
         :                                                                                                                          
 1exm(A) : ERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEMV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________                                                                              
 1aip(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
         :                                                                                                                          
 1exm(A) : MPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
90.0
Translation
(A)
-3.0
Closure
(%)
93.5
Bending Residues
( green )
  82 - 99
  214 - 217
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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