Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1tui (A)
  Conformer 2
(PDB)
2xqd (Z)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 4.09   11 - 94   98 - 216
2 190 2.33   95 - 97   217 - 403

Sequence


           ____________________________________________________________________________________________94__________________________ 
 1tui(A) : ********KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
         :                                                                                                                          
 2xqd(Z) : AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
           ____________________________________________________________________________________________94__________________________ 

           _____________________________________________________________________________________________216________________________ 
 1tui(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
         :                                                                                                                          
 2xqd(Z) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
           _____________________________________________________________________________________________216________________________ 

           ________________________________________________________________________________________________________________________ 
 1tui(A) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE 
         :                                                                                                                          
 2xqd(Z) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________                                                                            
 1tui(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
         :                                                                                                                          
 2xqd(Z) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
           _____________________________________________                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
84.4
Translation
(A)
1.5
Closure
(%)
91.7
Bending Residues
( green )
  94 - 99
  216 - 217
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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