Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase, 3 Flavoenzyme) (E.C.1.18.1.2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase, 3 Flavoenzyme) (E.C.1.18.1.2)
  Conformer 1
(PDB)
1fnd  
  Conformer 2
(PDB)
1fnb  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 261 0.17   22 - 200   209 - 231   251 - 278   282 - 312
2 30 0.32   201 - 208   232 - 250   279 - 281

Sequence


           ________________________________________________________________________________________________________________________ 
 1fnd    : HSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCD 
         :                                                                                                                          
 1fnb    : HSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCD 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________199______208____________________231________________250________ 
 1fnd    : LKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVEL 
         :                                                                                                                          
 1fnb    : LKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVEL 
           __________________________________________________________199______208____________________231________________250________ 

           _______________276__281_________________________________                                                                 
 1fnd    : WEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY                                                                 
         :                                                                                                                          
 1fnb    : WEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY                                                                 
           _______________276__281_________________________________                                                                 

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.0
Translation
(A)
0.1
Closure
(%)
87.5
Bending Residues
( green )
  199 - 201
  208 - 212
  231 - 232
  250 - 251
  276 - 279
  281 - 282
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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