Foki Restriction Endonuclease

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Foki Restriction Endonuclease
  Conformer 1
(PDB)
2fok (A)
  Conformer 2
(PDB)
1fok (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 204 0.74   9 - 14   112 - 113   146 - 188   227 - 243   263 - 408
2 122 0.53   15 - 111   114 - 145
3 168 0.69   189 - 192   412 - 575
4 24 1.04   204 - 220   250 - 261

Sequence


           _____10__________________________________________________________________________________________________111____________ 
 2fok(A) : *IRTFGWVQNPGKFENLKRVVQVFDRNSKVHNEVKNIKIPTLVKESKIQKELVAIMNQHDLIYTYKELVGTGT-----aPCDAIIQATIADQG--kGYIDNWSSDGFLRWAHALGFIEYI 
         :                                                                                                                          
 1fok(A) : KIRTFGWVQNPGKFENLKRVVQVFDRNSKVHNEVKNIKIPTLVKESKIQKELVAIMNQHDLIYTYKELVGTGTSIRSEAPCDAIIQATIADQGNKKGYIDNWSSDGFLRWAHALGFIEYI 
           _____10__________________________________________________________________________________________________111____________ 

           ___________________145________________________________________188_192_________________________220____________________243 
 2fok(A) : NKSDSFVITDVGLAYSKSADGSAIEKEILIEAISSYPPAIRILTLLEDGQHLTKFDLGKNLGFSGESGFTSLPEGILLDTLANAMPKDKGEIRNNWEGSSDKYARMIGGWLDKLGLVKQG 
         :                                                                                                                          
 1fok(A) : NKSDSFVITDVGLAYSKSADGSAIEKEILIEAISSYPPAIRILTLLEDGQHLTKFDLGKNLGFSGESGFTSLPEGILLDTLANAMPKDKGEIRNNWEGSSDKYARMIGGWLDKLGLVKQG 
           ___________________145________________________________________188_192_________________________220____________________243 

           ____________261_________________________________________________________________________________________________________ 
 2fok(A) : KKEFIIPT--nKEFISHAFKITGEGLKVLRRAKGSTKFTRVPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQ 
         :                                                                                                                          
 1fok(A) : KKEFIIPTpDNKEFISHAFKITGEGLKVLRRAKGS-----vPKRVYWEMLATNLTDKEYVRTRRALILEILIKAGSLKIEQIQDNLKKLGFDEVIETIENDIKGLINTGIFIEIKGRFYQ 
           ____________261_________________________________________________________________________________________________________ 

           _______________________________________408______________________________________________________________________________ 
 2fok(A) : LKDHILQFVIPNR-----lVKSELEEKKSELRHKLKYVPHEYIELIEIARNSTQDRILEMKVMEFFMKVYGYRGKHLGGSRKPDGAIYTVGSPIDYGVIVDTKAYSGGYNLPIGQADEMQ 
         :                                                                                                                          
 1fok(A) : LKDHILQFVIPNRGVTKQLVKSELEEKKSELRHKLKYVPHEYIELIEIARNSTQDRILEMKVMEFFMKVYGYRGKHLGGSRKPDGAIYTVGSPIDYGVIVDTKAYSGGYNLPIGQADEMQ 
           _______________________________________408______________________________________________________________________________ 

           _____________________________________________________________________________________________                            
 2fok(A) : RYVEENQTRNKHINPNEWWKVYPSSVTEFKFLFVSGHFKGNYKAQLTRLNHITNCNGAVLSVEELLIGGEMIKAGTLTLEEVRRKFNNGEINF                            
         :                                                                                                                          
 1fok(A) : RYVEENQTRNKHINPNEWWKVYPSSVTEFKFLFVSGHFKGNYKAQLTRLNHITNCNGAVLSVEELLIGGEMIKAGTLTLEEVRRKFNNGEINF                            
           _____________________________________________________________________________________________                            

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 6.9 -0.1 98.3   10 - 19   111 - 114   145 - 147 Bending Region Analysis
1 3 4.0 -0.6 49.0   188 - 189   408 - 421 Bending Region Analysis
1 4 10.8 0.1 63.5   220 - 227   243 - 250   261 - 263 Bending Region Analysis
3 4 10.3 0.5 1.5   192 - 204 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 3 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 3

Movement classification: Hinge

PyMOL Script

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