Gamma Crystallin D

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma Crystallin D
  Conformer 1
(PDB)
1hk0 (X)
  Conformer 2
(PDB)
1h4a (X)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 111 0.25   38 - 54   76 - 78   80 - 171
2 56 0.19   4 - 37   55 - 75   79 - 79

Sequence


           __________________________________36________________54___________________75_78__________________________________________ 
 1hk0(X) : GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEI 
         :                                                                                                                          
 1h4a(X) : GKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLHRGDYADHQQWMGLSDSVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEI 
           __________________________________36________________54___________________75_78__________________________________________ 

           _____________________________________________________                                                                    
 1hk0(X) : HSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS                                                                    
         :                                                                                                                          
 1h4a(X) : HSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVIDFS                                                                    
           _____________________________________________________                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.6
Translation
(A)
-0.2
Closure
(%)
0.2
Bending Residues
( green )
  36 - 41
  54 - 55
  75 - 76
  78 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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