Glucosamine-6-Phosphate Deaminase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glucosamine-6-Phosphate Deaminase
  Conformer 1
(PDB)
1jt9 (A)
  Conformer 2
(PDB)
1hot (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 0.53   6 - 136   145 - 145   156 - 201   240 - 245   261 - 262
2 76 0.83   3 - 5   137 - 144   146 - 155   202 - 239   246 - 260   263 - 264

Sequence


           ____5___________________________________________________________________________________________________________________ 
 1jt9(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
         :                                                                                                                          
 1hot(A) : MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQ 
           ____5___________________________________________________________________________________________________________________ 

           _____________136_____144______________________________________________________201___________________________________239_ 
 1jt9(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTL-------------------pKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
         :                                                                                                                          
 1hot(A) : YEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCD 
           _____________136_____144______________________________________________________201___________________________________239_ 

           _244_____________260______                                                                                               
 1jt9(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
         :                                                                                                                          
 1hot(A) : EPSTMELKVKTLRYFNELEAENIKGL                                                                                               
           _244_____________260______                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.2
Translation
(A)
0.0
Closure
(%)
68.6
Bending Residues
( green )
  5 - 6
  136 - 137
  144 - 156
  201 - 202
  239 - 240
  244 - 246
  260 - 263
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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