Gluconate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gluconate Kinase
  Conformer 1
(PDB)
1knq (A)
  Conformer 2
(PDB)
1ko8 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 117 0.4   7 - 38   71 - 90   98 - 106   112 - 167
2 44 0.73   39 - 70   91 - 97   107 - 111

Sequence


           __________________________________38______________________________70__________________90_____97______106__111___________ 
 1knq(A) : TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 
         :                                                                                                                          
 1ko8(A) : TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 
           __________________________________38______________________________70__________________90_____97______106__111___________ 

           ____________________________________________________                                                                     
 1knq(A) : ARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK*                                                                     
         :                                                                                                                          
 1ko8(A) : ARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKG                                                                     
           ____________________________________________________                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.3
Translation
(A)
0.1
Closure
(%)
74.9
Bending Residues
( green )
  38 - 39
  70 - 71
  90 - 91
  97 - 98
  106 - 107
  111 - 112
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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