Glutamate Dehydrogenase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase 1
  Conformer 1
(PDB)
3mw9 (A)
  Conformer 2
(PDB)
1nqt (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 244 1.76   51 - 206   381 - 381   384 - 458   485 - 496
2 212 1.35   11 - 20   207 - 380   382 - 383   459 - 484

Sequence


           __________________20____________________________________________________________________________________________________ 
 3mw9(A) : ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 
         :                                                                                                                          
 1nqt(A) : *****DPNFFKMVEGFFDRGASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDV 
           __________________20____________________________________________________________________________________________________ 

           ___________________________________________________________________________________206__________________________________ 
 3mw9(A) : PFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP 
         :                                                                                                                          
 1nqt(A) : PFGGAKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTP 
           ___________________________________________________________________________________206__________________________________ 

           ________________________________________________________________________________________________________________________ 
 3mw9(A) : GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 
         :                                                                                                                          
 1nqt(A) : GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGFPKAKPYEGSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPEADKIF 
           ________________________________________________________________________________________________________________________ 

           _________________380___________________________________________________________________________458______________________ 
 3mw9(A) : LERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 
         :                                                                                                                          
 1nqt(A) : LERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTA 
           _________________380___________________________________________________________________________458______________________ 

           _484_________________                                                                                                    
 3mw9(A) : AYVNAIEKVFRVYNEAGVTFT                                                                                                    
         :                                                                                                                          
 1nqt(A) : AYVNAIEKVFKVYNEAGVTFT                                                                                                    
           _484_________________                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.0
Translation
(A)
-0.6
Closure
(%)
65.2
Bending Residues
( green )
  20 - 51
  206 - 208
  380 - 384
  458 - 459
  484 - 485
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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