Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 1
  Conformer 1
(PDB)
2f36 (A)
  Conformer 2
(PDB)
6fqj (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 146 1.51   7 - 109   200 - 201   213 - 253
2 101 1.36   110 - 199   202 - 212

Sequence


           _________________________________________________________________________________________________________109____________ 
 2f36(A) : **TLIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQN-DKGEWNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKGTPID 
         :                                                                                                                          
 6fqj(D) : NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 
           _________________________________________________________________________________________________________110____________ 

           _____________________________________________________________________________199___________212__________________________ 
 2f36(A) : SADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTD--YALLMESTSIEYVTQRN-CNLTQIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQ 
         :                                                                                                                          
 6fqj(D) : SAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVCGNLDSKGYGIATPKGSSLGNAVNLAVLKLN 
           _____________________________________________________________________________202___________216__________________________ 

           _____________________                                                                                                    
 2f36(A) : EEGKLHMMKEKWWRGNG-CPS                                                                                                    
         :                                                                                                                          
 6fqj(D) : EQGLLDKLKNKWWYDKGEC**                                                                                                    
           _____________________                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
33.4
Translation
(A)
1.0
Closure
(%)
98.5
Bending Residues
( green )
  109 - 110
  199 - 202
  212 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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