6-Phosphogluconate Dehydrogenase, Decarboxylating

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 6-Phosphogluconate Dehydrogenase, Decarboxylating
  Conformer 1
(PDB)
2zyd (A)
  Conformer 2
(PDB)
2zyd (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 333 0.53   99 - 111   115 - 115   124 - 127   138 - 145   154 - 156   161 - 464
2 127 0.74   5 - 98   112 - 114   116 - 123   128 - 137   146 - 153   157 - 160

Sequence


           _______________________________________________________________________________________________98_________110_________12 
 2zyd(A) : *KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
         :                                                                                                                          
 2zyd(B) : SKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 
           _______________________________________________________________________________________________98_________110_________12 

           2__127_______137_____145_____153____160_________________________________________________________________________________ 
 2zyd(A) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
         :                                                                                                                          
 2zyd(B) : FIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTK 
           2__127_______137_____145_____153____160_________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2zyd(A) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
         :                                                                                                                          
 2zyd(B) : KDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFR 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________________               
 2zyd(A) : AGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEW*               
         :                                                                                                                          
 2zyd(B) : AGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL               
           __________________________________________________________________________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.3
Translation
(A)
0.4
Closure
(%)
100.0
Bending Residues
( green )
  98 - 100
  110 - 116
  122 - 125
  127 - 128
  137 - 138
  145 - 146
  153 - 154
  156 - 157
  160 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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