Glutamate Receptor Delta-2 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Delta-2 Subunit
  Conformer 1
(PDB) 		2v3t (A)
  Conformer 2
(PDB) 		5cc2 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 136 1.48   7 - 109   211 - 211   216 - 254
2 87 1.42   110 - 210   212 - 213

Sequence


           _____________________________________________________________________________________________________105________________ 
 2v3t(A) : GVVLRVVTVLEEPFV-vSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSP----tWNGLVGELVFKRADIGISALTITPDRENVVDFTTRY-dYSVGVLLRR--sIQSLQ 
         :                                                                                                                          
 5cc2(A) : *VVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQ 
           _____________________________________________________________________________________________________105________________ 

           ______________________________________________________________________________________210_______________________________ 
 2v3t(A) : DLSKQTDIPYGTVLDSAVYQHVR-kGLNP-----sySQ-wR-iN------nNVLEsQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTV--tVADRGYGIALQHGSPYRDVFSQRIL 
         :                                                                                                                          
 5cc2(A) : DLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRIL 
           ______________________________________________________________________________________210_______________________________ 

           ______________________                                                                                                   
 2v3t(A) : ELQQSGD-dILKHKWWPKNGQC                                                                                                   
         :                                                                                                                          
 5cc2(A) : ELQQSGDMDILKHKWWP*****                                                                                                   
           ______________________                                                                                                   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.5
Translation
(A) 		-0.4
Closure
(%) 		58.3
Bending Residues
( green ) 		  105 - 110
  210 - 216
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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