Glycine Betaine/carnitine/choline-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Betaine/carnitine/choline-Binding Protein
  Conformer 1
(PDB) 		3ppo (A)
  Conformer 2
(PDB) 		3ppn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 162 0.42   34 - 135   240 - 299
2 104 0.4   136 - 239

Sequence


           __________________________________________________________________________________________________132___________________ 
 3ppo(A) : DTIKIGAQSMTESEIVANMIAQLIEHDTDLNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQKRFSYKWFDSYGFDNTYAFTVTKKFAEKEHI 
         :                                                                                                                          
 3ppn(A) : DTIKIGAQSMTESEIVANMIAQLIEHDTDLNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQKRFSYKWFDSYGFDNTYAFTVTKKFAEKEHI 
           __________________________________________________________________________________________________132___________________ 

           _____________________________________________________________________________________239________________________________ 
 3ppo(A) : NTVSDLKKNASQYKLGVDNAWLKRKGDGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKDDKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDT 
         :                                                                                                                          
 3ppn(A) : NTVSDLKKNASQYKLGVDNAWLKRKGDGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKDDKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDT 
           _____________________________________________________________________________________239________________________________ 

           ________________________________                                                                                         
 3ppo(A) : ETMQELNYEVDGKLKEPSVVAKEFLEKHHYFD                                                                                         
         :                                                                                                                          
 3ppn(A) : ETMQELNYEVDGKLKEPSVVAKEFLEKHHY**                                                                                         
           ________________________________                                                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.9
Translation
(A) 		0.2
Closure
(%) 		99.6
Bending Residues
( green ) 		  132 - 136
  239 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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