Hemoglobin-Based Blood Substitute

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hemoglobin-Based Blood Substitute
  Conformer 1
(PDB) 		1abw (A)
  Conformer 2
(PDB) 		1aby (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 1.0   81 - 81   84 - 86   136 - 136   140 - 277
2 132 0.44   3 - 80   82 - 83   87 - 135   137 - 139

Sequence


           ______________________________________________________________________________80____86__________________________________ 
 1abw(A) : MLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 
         :                                                                                                                          
 1aby(A) : MLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 
           ______________________________________________________________________________80____86__________________________________ 

           ____________135_________________________________________________________________________________________________________ 
 1abw(A) : VHASLDKFLASVSTVLTSKYRGVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNF 
         :                                                                                                                          
 1aby(A) : VHASLDKFLASVSTVLTSKYRGVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNF 
           ____________135_________________________________________________________________________________________________________ 

           ___________________________________________                                                                              
 1abw(A) : KLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR                                                                              
         :                                                                                                                          
 1aby(A) : KLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.7
Translation
(A) 		0.0
Closure
(%) 		27.8
Bending Residues
( green ) 		  80 - 84
  86 - 90
  135 - 144
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download