Iron Binding Protein Fbpa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Iron Binding Protein Fbpa
  Conformer 1
(PDB) 		1q35 (A)
  Conformer 2
(PDB) 		1si0 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 187 0.26   64 - 67   100 - 233   259 - 265   270 - 311
2 97 0.25   6 - 31   54 - 63   68 - 99   234 - 258   266 - 269

Sequence


           _____________________________________________________________63__67______________________________99_____________________ 
 1q35(A) : ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFAD-gLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFD 
         :                                                                                                                          
 1si0(A) : ANEVNVYSYRQPYLIEPMLKNFEKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVLEKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFD 
           _____________________________________________________________63__67______________________________99_____________________ 

           ______________________________________________________________________________________________________________233_______ 
 1q35(A) : YLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHS 
         :                                                                                                                          
 1si0(A) : YLDLAKPEYKGKVCVRSGKNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHS 
           ______________________________________________________________________________________________________________233_______ 

           _______________258____265_269_________________________________________________                                           
 1q35(A) : PNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFDDFSE                                           
         :                                                                                                                          
 1si0(A) : PNKANAVKLIEYLSGEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVKFDDF**                                           
           _______________258____265_269_________________________________________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.4
Translation
(A) 		-0.1
Closure
(%) 		71.2
Bending Residues
( green ) 		  63 - 64
  67 - 68
  99 - 100
  233 - 234
  258 - 259
  265 - 266
  269 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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