Kir3.1-Prokaryotic Kir Channel Chimera

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kir3.1-Prokaryotic Kir Channel Chimera
  Conformer 1
(PDB) 		2qks (A)
  Conformer 2
(PDB) 		2qks (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 183 1.68   7 - 32   133 - 309
2 100 0.04   33 - 132

Sequence


           ______________32______________________________________________________________________________________________________13 
 2qks(A) : KKRQRFVDKNGRCNVQHGNyLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFI 
         :                                                                                                                          
 2qks(B) : **RQRFVDKNGRCNV-------dLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFI 
           ______________32______________________________________________________________________________________________________13 

           0_______________________________________________________________________________________________________________________ 
 2qks(A) : KMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGI 
         :                                                                                                                          
 2qks(B) : KMSQ------tLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFEVVVILEGI 
           0_______________________________________________________________________________________________________________________ 

           _____________________________________________________________________                                                    
 2qks(A) : VETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEVPTPPYSVKEQEEM*******                                                    
         :                                                                                                                          
 2qks(B) : VETTGMTCQARTSYTEDEVLWGHRFFPVISLEEGFFKVDYSQFHATFEVPTPPYSVKEQEEMLLMSSPL                                                    
           _____________________________________________________________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.0
Translation
(A) 		4.1
Closure
(%) 		41.9
Bending Residues
( green ) 		  32 - 33
  130 - 141
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download