Probable Atp-Dependent RNA Helicase Ddx48

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Atp-Dependent RNA Helicase Ddx48
  Conformer 1
(PDB) 		2hyi (C)
  Conformer 2
(PDB) 		2hxy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 1.45   40 - 240
2 163 3.48   241 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 2hyi(C) : DMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI 
         :                                                                                                                          
 2hxy(A) : ****************PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________240_____________________ 
 2hyi(C) : GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 
         :                                                                                                                          
 2hxy(A) : GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE 
           ________________________________________________________________________________________________240_____________________ 

           ________________________________________________________________________________________________________________________ 
 2hyi(C) : EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 
         :                                                                                                                          
 2hxy(A) : EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 
           ________________________________________________________________________________________________________________________ 

           ________________________________                                                                                         
 2hyi(C) : KNDDIRILRDIEQYYSTQIDEMPMNVADLILE                                                                                         
         :                                                                                                                          
 2hxy(A) : KNDDIRILRDIEQYYSTQIDEMPMNVADLILE                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		152.2
Translation
(A) 		14.5
Closure
(%) 		85.2
Bending Residues
( green ) 		  240 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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