DynDom - Protein Domain Motions

Protein Calg3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Protein Calg3
Conformer 1 (PDB)	3d0r (B)
Conformer 2 (PDB)	3oti (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	192	1.67	-1 - 4 10 - 10 13 - 78 80 - 134 140 - 171 185 - 187 191 - 208 313 - 314 364 - 372
2	182	1.51	5 - 9 11 - 12 79 - 79 135 - 139 172 - 184 188 - 190 209 - 312 315 - 363

Sequence

`__________4______________________________________________________________________76_____________________________________` `3d0r(B) : IEGRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVV` `:` `3oti(A) : **RHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVAEHADRAAAAGLEVVDVAPDYSAVKVFEQVAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVV` `__________4______________________________________________________________________76_____________________________________` `__________________134__139_____________________________171_____179________190____________205____________________________` `3d0r(B) : YEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPI` `:` `3oti(A) : YEQGATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLTDLMDKHQVSLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPI` `__________________134__139_____________________________171_____179________190____________205____________________________` `____________________________________________________________________________312_________________________________________` `3d0r(B) : IAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDESLRTAAREV` `:` `3oti(A) : IAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTPLHTLLRTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGDESLRTAAREV` `____________________________________________________________________________312_________________________________________` `_______363____________` `3d0r(B) : REEMVALPTPAETVRRIVERI` `:` `3oti(A) : REEMVALPTPAETVRRIVERIS` `_______363____________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	13.5
Translation (A)	1.0
Closure (%)	98.0
Bending Residues ( green )	4 - 13 76 - 82 134 - 135 139 - 140 171 - 172 179 - 188 190 - 191 205 - 212 312 - 315 363 - 364
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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