Zinc-Alpha-2-Glycoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Zinc-Alpha-2-Glycoprotein
  Conformer 1
(PDB)
1zag (A)
  Conformer 2
(PDB)
3es6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 177 0.58   8 - 181   183 - 183   238 - 239
2 91 0.56   182 - 182   184 - 237   240 - 275

Sequence


           ________________________________________________________________________________________________________________________ 
 1zag(A) : ***DGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQGRFGCEIENNRSSGAFWKYYYDG 
         :                                                                                                                          
 3es6(A) : ENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDRKSQPMGLWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQGRFGCEIENNRSSGAFWKYYYDG 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________181_____________________________________________________237____ 
 1zag(A) : KDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGT 
         :                                                                                                                          
 3es6(A) : KDYIEFNKEIPAWVPFDPAAQITKQKWEAEPVYVQRAKAYLEEECPATLRKYLKYSKNILDRQDPPSVVVTSHQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGT 
           _________________________________________________________181_____________________________________________________237____ 

           ____________________________________                                                                                     
 1zag(A) : YQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPWEA                                                                                     
         :                                                                                                                          
 3es6(A) : YQSWVVVAVPPQDTAPYSCHVQHSSLAQPLVVPWEA                                                                                     
           ____________________________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.2
Translation
(A)
-0.2
Closure
(%)
4.8
Bending Residues
( green )
  181 - 184
  237 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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