DynDom - Protein Domain Motions

Putative Major Capsid Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Putative Major Capsid Protein
Conformer 1 (PDB)	6g44 (A)
Conformer 2 (PDB)	6g45 (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	348	0.71	26 - 292 324 - 325 334 - 351 359 - 366 377 - 385 390 - 391 417 - 417 423 - 423 440 - 445 463 - 496
2	127	0.56	293 - 323 326 - 333 352 - 358 367 - 376 386 - 389 392 - 416 418 - 422 424 - 439 446 - 462 497 - 500

Sequence

`________________________________________________________________________________________________________________________` `6g44(A) : NTPPELDTVLQAPYAYNWPTSKNVKIASRIGIPYSTFQTIQPVSDAPNNGIGQITFNQPLGNLTGGAPRLRVSFTAEIKNILADSSLKDQIGLKSFPVNRSIPVAVINMNGKTFTSYPAQ` `:` `6g45(A) : NTPPELDTVLQAPYAYNWPTSKNVKIASRIGIPYSTFQTIQPVSDAPNNGIGQITFNQPLGNLTGGAPRLRVSFTAEIKNILADSSLKDQIGLKSFPVNRSIPVAVINMNGKTFTSYPAQ` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6g44(A) : LIKLHQYNADPLELALLSPCSDVDEYNKIKAVSMNNPYRQGTESTDSRMSRGLGCNYAYYIHPRAAGSTSVKIDFVVDEALVANPTQYKNIKDPVPFRNLNTFKVILDGQFKPENMIGIA` `:` `6g45(A) : LIKLHQYNADPLELALLSPCSDVDEYNKIKAVSMNNPYRQGTESTDSRMSRGLGCNYAYYIHPRAAGSTSVKIDFVVDEALVANPTQYKNIKDPVPFRNLNTFKVILDGQFKPENMIGIA` `________________________________________________________________________________________________________________________` `________________________________________________292____________________________323_______333_______________351____358___` `6g44(A) : DDVKLVAGKADFEVDITGFKINMLVQNWVAPLEIGDIPKTIIYNTPLISLEGNISSMCLNTKDPYGIPGERNKHILTTHSMAMNNVPSMFAVMVSQETPTKKFAPDQLAGIIGLEIKVDS` `:` `6g45(A) : DDVKLVAGKADFEVDITGFKINMLVQNWVAPLEIGDIPKTIIYNTPLISLEGNISSMCLNTKDPYGIPGERNKHILTTHSMAMNNVPSMFAVMVSQETPTKKFAPDQLAGIIGLEIKVDS` `________________________________________________292____________________________323_______333_______________351____358___` `__366_______376______385_______________________411________422______________439___445______________462___________________` `6g44(A) : DVGIFRELEQQQLYELSSSNGYNKRFSCFSGALANGLTVADPAVAAGNKFKEAIFGAGSVIFFRPSDLGLKDYNVMANANKSINMQVQATFVTPEAAGTGAHYKLEVFSIRDNLTYSFED` `:` `6g45(A) : DVGIFRELEQQQLYELSSSNGYNKRFSCFSGALANGLTVADPAVAAGNKFKEAIFGAGSVIFFRPSDLGLKDYNVMANANKSINMQVQATFVTPEAAGTGAHYKLEVFSIRDNLTYSFED` `__366_______376______385_______________________411________422______________439___445______________462___________________` `____________496________________` `6g44(A) : GTFMDDLTLYTPDQLLRSPLKLTkLMRVMGG` `:` `6g45(A) : GTFMDDLTLYTPDQLLRSPLKLT********` `____________496________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	4.2
Translation (A)	-0.2
Closure (%)	46.2
Bending Residues ( green )	292 - 293 323 - 326 333 - 334 351 - 352 358 - 359 366 - 367 376 - 377 385 - 392 411 - 418 422 - 424 439 - 440 445 - 446 462 - 463 496 - 497
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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