Putative D-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative D-Lactate Dehydrogenase
  Conformer 1
(PDB) 		7wn9 (A)
  Conformer 2
(PDB) 		8grv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 209 0.42   11 - 11   99 - 306
2 123 0.35   1 - 10   12 - 98   307 - 332

Sequence


           __________10______________________________________________________________________________________98____________________ 
 7wn9(A) : MDMKITLFSSKPYWVKWFNELNKFSYEINYVTSACDIKSVNEAKGSEAVCCFVNDDLSKEVIETLHSNGTKVILMRCAGFNKVDLDTANKLGIPVLRVPAYSPNAVSEYALSLIMALNRK 
         :                                                                                                                          
 8grv(A) : ADMKITLFSSKPYWVKWFNELNKFSYEINYVTSACDIKSVNEAKGSEAVCCFVNDDLSKEVIETLHSNGTKVILMRCAGFNKVDLDTANKLGIPVLRVPAYSPNAVSEYALSLIMALNRK 
           __________10______________________________________________________________________________________98____________________ 

           ________________________________________________________________________________________________________________________ 
 7wn9(A) : THKAHDRVRDANFEINGMEGFNMVSKVYGIVGTGNIGEQLCRVLKLGFGAKVIAYDIIENKAVTDIGIEYVKTLDEIWKQCDVISLHTPLNSQTKYMVNSESIEKMRDGVMIINVSRGAL 
         :                                                                                                                          
 8grv(A) : THKAHDRVRDANFEINGMEGFNMVSKVYGIVGTGNIGEQLCRVLKLGFGAKVIAYDIIENKAVTDIGIEYVKTLDEIWKQCDVISLHTPLNSQTKYMVNSESIEKMRDGVMIINVSRGAL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________302___________________________________                      
 7wn9(A) : VNASDAIVGLKSGKISSLGMDVYENETDYFYQDHNGSIIKDDNLSLLISYPNVMITSHQAWYTKEAISCICGTSLQNFVDFRSNQIKKSNLVNNPISSQ                      
         :                                                                                                                          
 8grv(A) : VNASDAIVGLKSGKISSLGMDVYENETDYFYQDHNGSIIKDDNLSLLISYPNVMITSHQAWYTKEAISCICGTSLQNFVDFRSNQIKKSNLVNNPI***                      
           _____________________________________________________________302___________________________________                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.8
Translation
(A) 		-0.2
Closure
(%) 		45.4
Bending Residues
( green ) 		  10 - 12
  98 - 103
  302 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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