R-Alcohol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name R-Alcohol Dehydrogenase
  Conformer 1
(PDB) 		1nxq (A)
  Conformer 2
(PDB) 		1zk4 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 160 0.25   69 - 69   88 - 136   138 - 247
2 82 0.21   6 - 68   70 - 87   137 - 137

Sequence


           __________________________________________________________________68_________________87_________________________________ 
 1nxq(A) : SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 
         :                                                                                                                          
 1zk4(A) : SNRLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 
           __________________________________________________________________68_________________87_________________________________ 

           _____________136________________________________________________________________________________________________________ 
 1nxq(A) : TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGS 
         :                                                                                                                          
 1zk4(A) : TRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGS 
           _____________136________________________________________________________________________________________________________ 

           ___________                                                                                                              
 1nxq(A) : EFVVDGGYTAQ                                                                                                              
         :                                                                                                                          
 1zk4(A) : EFVVDGGYTAQ                                                                                                              
           ___________                                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		1.9
Translation
(A) 		0.0
Closure
(%) 		99.3
Bending Residues
( green ) 		  68 - 70
  87 - 88
  136 - 138
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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