Replication Protein E1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Replication Protein E1
  Conformer 1
(PDB)
2gxa (C)
  Conformer 2
(PDB)
2gxa (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 206 0.49   370 - 575
2 57 0.15   313 - 369

Sequence


           ________________________________________________________366_____________________________________________________________ 
 2gxa(C) : TEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKN 
         :                                                                                                                          
 2gxa(D) : TEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKN 
           ________________________________________________________366_____________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2gxa(C) : CLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQP 
         :                                                                                                                          
 2gxa(D) : CLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQP 
           ________________________________________________________________________________________________________________________ 

           ______________________________                                                                                           
 2gxa(C) : CTDESGEQPFNITDADWKSFFVRLWGRLDL                                                                                           
         :                                                                                                                          
 2gxa(D) : CTDESGEQPFNITDADWKSFFVRLWGRLDL                                                                                           
           ______________________________                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.1
Translation
(A)
0.3
Closure
(%)
50.4
Bending Residues
( green )
  366 - 370
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download