Smad 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Smad 3
  Conformer 1
(PDB) 		1mjs (A)
  Conformer 2
(PDB) 		1uzf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 51 10.41   251 - 301
2 27 8.76   309 - 341

Sequence


           ________________________________________________________________________________________________________________________ 
 1mjs(A) : *******************************************************************************PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERF 
         :                                                                                                                          
 1uzf(A) : DEAEASKFVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLDMETTYSVATVCHPNGSCL 
           ________________________________________________________________________________________________________________________ 

           ______________________________301_______________________________________________________________________________________ 
 1mjs(A) : CLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRaTVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWtVTSTPCWIELHLN 
         :                                                                                                                          
 1uzf(A) : QLEPDLTNVMATSRKYEDLLWAWEGWRDKAGRAILQFYPKYVELINQAARLNGYVDAGD-SWRSMYETPSLEQDLERLFQELQPLYLNLHAYVRRALHRHYGAQHINLEGPIPAHLLGNM 
           ______________________________192_______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1mjs(A) : GPLQWLDKVLTQMGSPS******************************************************************************************************* 
         :                                                                                                                          
 1uzf(A) : WAQTWSNIYDLVVPFPSAPSMDTTEAMLKQGWTPRRMFKEADDFFTSLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDFYNGKDFRIKQCTTVNLEDLVVAHHEMGHIQYFMQYKDLP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1mjs(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 1uzf(A) : VALREGANPGFHEAIGDVLALSVSTPKHLHSLNLLSsDEHDINFLMKMALDKIAFIPFSYLVDQWRWRVFDGSITKENYNQEWWSLRLKYQGLCPPVPRTQGDFDPGAKFHIPSSVPYIR 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________                          
 1mjs(A) : ***********************************************************************************************                          
         :                                                                                                                          
 1uzf(A) : YFVSFIIQFQFHEALCQAAGHTGPLHKCDIYQSKEAGQRLATAMKLGFSRPWPEAMQLITGQPNMSASAMLSYFKPLLDWLRTENELHGEKLGWP                          
           _______________________________________________________________________________________________                          

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		87.1
Translation
(A) 		-5.5
Closure
(%) 		96.0
Bending Residues
( green ) 		  301 - 309
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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