Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1, Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase 1, Mitochondrial
  Conformer 1
(PDB) 		3oxo (A)
  Conformer 2
(PDB) 		3k6m (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 330 0.71   3 - 244   277 - 279   288 - 356   381 - 396
2 131 1.02   245 - 276   280 - 287   357 - 380   397 - 477

Sequence


           ________________________________________________________________________________________________________________________ 
 3oxo(A) : TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTST 
         :                                                                                                                          
 3k6m(C) : TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTST 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3oxo(A) : GYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI 
         :                                                                                                                          
 3k6m(C) : GYGTLVQEGGSPIKYNKDGSIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRI 
           ________________________________________________________________________________________________________________________ 

           _244__________________276___282______________________________________________________________________355________________ 
 3oxo(A) : ERLSVRKgDNVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDL 
         :                                                                                                                          
 3k6m(C) : ERLSVR---nVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDL 
           _244__________________276___282______________________________________________________________________355________________ 

           ___377_____________393_______________________________________________________________________________________            
 3oxo(A) : ANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQLE            
         :                                                                                                                          
 3k6m(C) : ANWMIPGKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVT            
           ___377_____________393_______________________________________________________________________________________            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.7
Translation
(A) 		0.6
Closure
(%) 		96.7
Bending Residues
( green ) 		  244 - 262
  276 - 280
  282 - 302
  355 - 357
  377 - 384
  393 - 397
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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