DynDom - Protein Domain Motions

Sucrose Hydrolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Sucrose Hydrolase
Conformer 1 (PDB)	3czl (A)
Conformer 2 (PDB)	3czk (A)
Window Length	9
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	336	0.47	84 - 123 125 - 126 160 - 161 320 - 333 337 - 343 345 - 380 382 - 632
2	266	0.53	10 - 83 124 - 124 127 - 159 162 - 319 334 - 336 344 - 344 381 - 381

Sequence

`___________________________________________________________________________82______________________________________123__` `3czl(A) : IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHL` `:` `3czk(A) : IDPPALRAAFAGPLDPQHAEVLLSRYDQHASRLLDALHALYGQRADYASWLAQWLGEVGDIARQRPQALQTLDSTRHAGWFGQPHMLGYSAYADRFAGTLQGVAERVPYLQELGVRYLHL` `___________________________________________________________________________82______________________________________123__` `_______________________________159______________________________________________________________________________________` `3czl(A) : LPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQV-----pGNFTWVDDTAQWMWTTFY` `:` `3czk(A) : LPFLRARAGDNDGGFAVSDYGQVEPSLGSNDDLVALTSRLREAGISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFADRTVPDRYEATLGQVFPHTAPGNFTWVDDTAQWMWTTFY` `_______________________________159______________________________________________________________________________________` `_______________________________________________________________________319___________333_______343______________________` `3czl(A) : PYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAQAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRG` `:` `3czk(A) : PYQWDLNWSNPAVFGDMALAMLRLANLGVEAFRLDSTAYLWKRIGTDCMNQSEAHTLLVALRAVTDIVAPAVVMKAQAIVPMTQLPPYFGSGVDEGHECHLAYHSTLMAAGWSALALQRG` `_______________________________________________________________________319___________333_______343______________________` `____________380_________________________________________________________________________________________________________` `3czl(A) : DILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQ-vHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPL` `:` `3czk(A) : DILHNVIAHSPPLPRHCAWLSYVRCHDDIGWNVLQHEACGNAAQPPFSLRDVARFYANAVPGSYARGESFQgVHGTNGMAAALAGIQAAQEAGDAAALAVAVDRLVLLYAIALAMPGVPL` `____________380_________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3czl(A) : IYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLLA` `:` `3czk(A) : IYMGDELAMVNDPGYRDDPHRQHEGRWLHRPAMDWQLAAQRHDAKSLSGTVYRRLRGLIRQRAALGALAADQALASIALNDPRVFALTRGDSFIALHNFSDQLLDVELAAIGVDGWTLL-` `________________________________________________________________________________________________________________________` `____________________` `3czl(A) :` `IrGDGSIVLPPYGVRWLQ**` `:` `3czk(A) :` `-rGDGSIVLPPYGVRWLQRG` `____________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	3.8
Translation (A)	0.0
Closure (%)	86.0
Bending Residues ( green )	82 - 84 123 - 127 159 - 162 319 - 320 333 - 337 343 - 345 380 - 382
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file

Download