Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Periplasmic Sugar-Binding Protein
  Conformer 1
(PDB) 		7c6f (A)
  Conformer 2
(PDB) 		7c66 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 246 1.32   117 - 295   348 - 366   368 - 415
2 165 0.52   5 - 116   296 - 347   367 - 367

Sequence


           _________________________________________________________________________________________________________________116____ 
 7c6f(A) : *KTLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVDDVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRA 
         :                                                                                                                          
 7c66(A) : QKTLEVWIMPNSPQPAEDFKALVAPFEKAHGVEVKVTVLDWGVAWTKITTAATSGVGPDLTQLGTTWVGAISAMGVLEPVDDVLEALGGEKAYLPAVWRTTRLEGARQATAVPWFSELRA 
           _________________________________________________________________________________________________________________116____ 

           ________________________________________________________________________________________________________________________ 
 7c6f(A) : FYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPETKAPLAPLCTPGRTP-RTLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIE 
         :                                                                                                                          
 7c66(A) : FYYRTDALKAAGVNPAEMFASWQGFEAGLARLKASSFRDPETKAPLAPLCTPGKNSWDVLHNAAPWIWGAGGEIVRQAGGRWQSALNSPESLEGLYFFLSLAQKGYVPAESLEKNTAQIE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________295__________________________________________340___________________ 
 7c6f(A) : ADFQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGPEAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAA 
         :                                                                                                                          
 7c66(A) : ADFQAGKCAVFASGPWMIQRAQVPEAKGGFAERTAAKNLGVAPYPAGPKGRYTFFGGSNLALFNFSKNKPLAKELLKYLGGPEAQVRYAQMTGMLPALRSAWSDPSFQQNPLLRTFIQAA 
           _____________________________________________________296__________________________________________341___________________ 

           ____366___________________________________________________                                                               
 7c6f(A) : QFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQALRHH                                                               
         :                                                                                                                          
 7c66(A) : QFGRTYPSLAGWGGVENLAVQHLGMAWDLVAQGRLTREALKDLMDKASAAINQALRHH                                                               
           ____367___________________________________________________                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.4
Translation
(A) 		0.5
Closure
(%) 		100.0
Bending Residues
( green ) 		  116 - 117
  295 - 296
  340 - 348
  366 - 368
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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