DynDom - Protein Domain Motions

Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Transcriptional Regulator (Ntrc Family)
Conformer 1 (PDB)	1ny5 (A)
Conformer 2 (PDB)	1ny6 (D)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	141	0.93	155 - 156 160 - 167 176 - 181 183 - 183 185 - 308
2	101	0.71	140 - 154 157 - 159 168 - 175 182 - 182 184 - 184 309 - 381

Sequence

`________________________________________________________________________________________________________________________` `1ny5(A) : MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK` `:` `1ny6(D) : **********************************************************************************************************************` `________________________________________________________________________________________________________________________` `______________________________153___159_____167_____175___181___________________________________________________________` `1ny5(A) : LRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI` `:` `1ny6(D) : ***************EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEI` `______________________________153___159_____167_____175___181___________________________________________________________` `_________________________________________________________________308____________________________________________________` `1ny5(A) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK` `:` `1ny6(D) : GELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELK` `_________________________________________________________________308____________________________________________________` `________________________` `1ny5(A) : NVIERAVLFSEGKFIDRGELSCLV` `:` `1ny6(D) : NVIERAVLFSEGKFIDRGELSCLV` `________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	9.3
Translation (A)	0.5
Closure (%)	85.2
Bending Residues ( green )	153 - 157 159 - 160 167 - 168 175 - 176 181 - 185 308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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