Udp-Glucose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Glucose 4-Epimerase
  Conformer 1
(PDB) 		3enk (B)
  Conformer 2
(PDB) 		1ek5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 256 1.26   8 - 134   140 - 204   237 - 269   304 - 334
2 71 0.8   135 - 139   205 - 236   270 - 303

Sequence


           ________________________________________________________________________________________________________________________ 
 3enk(B) : MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKR------EAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRV 
         :                                                                                                                          
 1ek5(A) : **MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEI 
           ________________________________________________________________________________________________________________________ 

           _________________134____________________________________________________________________204___________________________23 
 3enk(B) : MRERAVKRIVFSSSATVYGVPERSPIDETFPLSA-TNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGV 
         :                                                                                                                          
 1ek5(A) : MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 
           _________________138____________________________________________________________________209___________________________23 

           4________________________________269_______________________________303______________________________________             
 3enk(B) : RDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPRGF**             
         :                                                                                                                          
 1ek5(A) : RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT             
           9________________________________274_______________________________308______________________________________             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.7
Translation
(A) 		-0.3
Closure
(%) 		84.0
Bending Residues
( green ) 		  134 - 140
  204 - 205
  234 - 237
  269 - 270
  303 - 304
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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