Uracil-Dna Glycosylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uracil-Dna Glycosylase
  Conformer 1
(PDB) 		1ssp (E)
  Conformer 2
(PDB) 		1akz (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 118 0.8   86 - 157   160 - 161   195 - 234   246 - 249
2 99 0.63   158 - 159   162 - 194   235 - 245   250 - 302

Sequence


           _________________________________________________________________________157__________________________________194_______ 
 1ssp(E) : MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVL 
         :                                                                                                                          
 1akz(A) : MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVL 
           _________________________________________________________________________157__________________________________194_______ 

           ______________________________234________245_249_______________________________________________________                  
 1ssp(E) : LLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL                  
         :                                                                                                                          
 1akz(A) : LLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL                  
           ______________________________234________245_249_______________________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.6
Translation
(A) 		-0.2
Closure
(%) 		93.9
Bending Residues
( green ) 		  157 - 162
  194 - 195
  234 - 235
  245 - 246
  249 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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