Amine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amine Dehydrogenase
  Conformer 1
(PDB) 		7zbo (A)
  Conformer 2
(PDB) 		7zbo (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 270 0.32   11 - 170   194 - 194   204 - 235   262 - 278   290 - 349
2 47 0.6   171 - 171   195 - 203   236 - 261   279 - 289

Sequence


           ________________________________________________________________________________________________________________________ 
 7zbo(A) : HHHHSPLRVALYGFGNQNKEMAKMLVERKDVEIVAVISNKSNVGKDFGEVIGLAPQGILVTAGLDAAETLRTTNPQIAMLSTLSTVGDIESQLRACAENKVNVYTIAEELTFSWTSAPEK 
         :                                                                                                                          
 7zbo(D) : ****SPLRVALYGFGNQNKEMAKMLVERKDVEIVAVISNKSNVGKDFGEVIGLAPQGILVTAGLDAAETLRTTNPQIAMLSTLSTVGDIESQLRACAENKVNVYTIAEELTFSWTSAPEK 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________169___________________________________________________________231____________ 
 7zbo(A) : TKEMDELFKEHNVSLIGGGFLDGACCDMARTMAAMMHKIDKLDGGLQYNVDHYGQVLAIAHGVGLSEEEFYAENGPGWTSPTSYPKSYVYNMNDWFASAFGLTVIKTEEVKTPTKAPIEL 
         :                                                                                                                          
 7zbo(D) : TKEMDELFKEHNVSLIGGGFLDGACCDMARTMAAMMHKIDKLDGGLQYNVDHYGQVLAIAHGVGLS----yAENGPGWTSPTSYPKSYVYNMNDWFASAFGLTVIKTEEVKTPTKAPIEL 
           ___________________________________________169___________________________________________________________231____________ 

           _______________261______________278________289______________________________________________________________             
 7zbo(A) : YSEAIGRAIPVGQCTGMIVTATTTTEEGVIIVEKQVGKCYEDGDEDMVFMNLEGNPTGGVGFTMKNPPTPAMTNTIAISRMFQTVDAPAGYITTDKLPTMEAYVHGRL             
         :                                                                                                                          
 7zbo(D) : YSEAIGRAIPVGQCTGMIVTATTTTEEGVIIVEKQVGKCYEDGDEDMVFMNLEGNPTGGVGFTMKNPPTPAMTNTIAISRMFQTVDAPAGYITTDKLPTMEAYVHGRL             
           _______________261______________278________289______________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.6
Translation
(A) 		-0.5
Closure
(%) 		99.2
Bending Residues
( green ) 		  169 - 209
  231 - 236
  261 - 263
  278 - 279
  289 - 290
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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