C-X-C Chemokine Receptor Type 4, Lysozyme Chimera

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name C-X-C Chemokine Receptor Type 4, Lysozyme Chimera
  Conformer 1
(PDB) 		3odu (A)
  Conformer 2
(PDB) 		3oe0 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 268 1.81   29 - 1002   1200 - 301
2 159 0.97   1003 - 1161

Sequence


           ________________________________________________________________________________________________________________________ 
 3odu(A) : **PCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS 
         :                                                                                                                          
 3oe0(A) : KEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQ----sMTDKYRLHLSVADLLFVITLPFWAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________225_______________________________________ 
 3odu(A) : QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT 
         :                                                                                                                          
 3oe0(A) : QRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSH---NIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT 
           ______________________________________________________________________________225_______________________________________ 

           ________________________________________________________________________________________________________________________ 
 3odu(A) : KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFR 
         :                                                                                                                          
 3oe0(A) : KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFR 
           ________________________________________________________________________________________________________________________ 

           __1160______________________________________________________________________________________________________             
 3odu(A) : TGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ             
         :                                                                                                                          
 3oe0(A) : TGTWDAYg---HQKRKALKPTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYA*************************             
           __1160______________________________________________________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		107.2
Translation
(A) 		-1.6
Closure
(%) 		59.7
Bending Residues
( green ) 		  225 - 1004
  1160 - 238
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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