Growth Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Growth Factor
  Conformer 1
(PDB) 		1gri (A)
  Conformer 2
(PDB) 		1fyr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 63 1.24   60 - 122
2 28 1.37   123 - 150

Sequence


           _______________________________________________________________________________________________________________120______ 
 1gri(A) : MEAIAKYDFKATADDELSFKRGDILKVqNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFN 
         :                                                                                                                          
 1fyr(A) : ***************************************************HPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFN 
           _______________________________________________________________________________________________________________120______ 

           ___________________________________________________________________________________________                              
 1gri(A) : SLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV                              
         :                                                                                                                          
 1fyr(A) : SLNELVDYHRSTSVSRNQQIFLRDIE*****************************************************************                              
           ___________________________________________________________________________________________                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		177.1
Translation
(A) 		1.5
Closure
(%) 		84.6
Bending Residues
( green ) 		  120 - 123
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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