L-3-Hydroxyacyl-Coa Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-3-Hydroxyacyl-Coa Dehydrogenase
  Conformer 1
(PDB) 		1f14 (A)
  Conformer 2
(PDB) 		1f0y (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 161 0.49   15 - 57   82 - 199
2 24 0.4   58 - 81
3 101 0.33   200 - 300

Sequence


           ____________________________________________57______________________81__________________________________________________ 
 1f14(A) : KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTI 
         :                                                                                                                          
 1f0y(A) : KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTI 
           ____________________________________________57______________________81__________________________________________________ 

           _________________________________________________________________199____________________________________________________ 
 1f14(A) : FASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLD 
         :                                                                                                                          
 1f0y(A) : FASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLD 
           _________________________________________________________________199____________________________________________________ 

           ___________________________________________________                                                                      
 1f14(A) : YVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK                                                                      
         :                                                                                                                          
 1f0y(A) : YVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK                                                                      
           ___________________________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.9
Translation
(A) 		-0.2
Closure
(%) 		70.1
Bending Residues
( green ) 		  57 - 58
  81 - 82
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		14.6
Translation
(A) 		0.7
Closure
(%) 		99.4
Bending Residues
( green ) 		  199 - 203
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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