DynDom - Protein Domain Motions

Lipopolysaccharide 1,6-Galactosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Lipopolysaccharide 1,6-Galactosyltransferase
Conformer 1 (PDB)	5n7z (A)
Conformer 2 (PDB)	6y6i (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	239	0.2	3 - 3 16 - 16 22 - 24 27 - 27 29 - 29 116 - 125 128 - 131 137 - 354
2	113	0.35	4 - 15 17 - 21 25 - 26 28 - 28 30 - 115 126 - 127 132 - 136

Sequence

`___3__________15____21___________________________________________________________________________________________115____` `5n7z(A) : *MKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPH` `:` `6y6i(A) : AMKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPH` `___3__________15____21___________________________________________________________________________________________115____` `___125___131__136_______________________________________________________________________________________________________` `5n7z(A) : FSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISVVYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGDGSDFEKCQAYSRELGIEQRVI` `:` `6y6i(A) : FSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISVVYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGDGSDFEKCQAYSRELGIEQRVI` `___125___131__136_______________________________________________________________________________________________________` `______________________________________________________________________________________________________________________` `5n7z(A) : WYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIPGTIERFYDVLYFKNFNNAIFSKL` `:` `6y6i(A) : WYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIPGTIERFYDVLYFKNFNNAIFSKL` `______________________________________________________________________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.5
Translation (A)	0.1
Closure (%)	60.0
Bending Residues ( green )	3 - 4 15 - 17 21 - 35 115 - 116 125 - 128 131 - 132 136 - 137
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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