Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysr-Type Regulatory Protein
  Conformer 1
(PDB) 		5ae5 (A)
  Conformer 2
(PDB) 		5ae5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 211 0.78   88 - 298
2 70 2.27   7 - 87

Sequence


           _________________________________________________________________________83_____________________________________________ 
 5ae5(A) : MDLRDIDLNLLVVFNQLLLDRSVSTAGEK---tQPAVSNSLKRLRTALNDDLePTPYALHLAEPVIYALNTLQTALTTRDSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQI 
         :                                                                                                                          
 5ae5(B) : ****DIDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRTALNDDLePTPYALHLAEPVIYALNTLQTALTTRDSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAPHIQI 
           _________________________________________________________________________83_____________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5ae5(A) : STLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQR 
         :                                                                                                                          
 5ae5(B) : STLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKSPMSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIATVPQR 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________                                                                  
 5ae5(A) : FAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFSEARH                                                                  
         :                                                                                                                          
 5ae5(B) : FAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELFSE***                                                                  
           _______________________________________________________                                                                  

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		140.9
Translation
(A) 		-3.1
Closure
(%) 		52.7
Bending Residues
( green ) 		  83 - 92
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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