Manganese-Dependent Inorganic Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Dependent Inorganic Pyrophosphatase
  Conformer 1
(PDB) 		1k23 (A)
  Conformer 2
(PDB) 		1k23 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 182 0.08   4 - 188
2 116 0.29   189 - 304

Sequence


           ________________________________________________________________________________________________________________________ 
 1k23(A) : EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTAT 
         :                                                                                                                          
 1k23(B) : EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTAT 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________186__________________________________________________________ 
 1k23(A) : ILNKyKENNVKIEKEIAGLlSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNlKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKVVAE 
         :                                                                                                                          
 1k23(B) : ILNKyKENNVKIEKEIAGLlSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNlKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISKVVAE 
           ___________________________________________________________186__________________________________________________________ 

           ______________________________________________________________                                                           
 1k23(A) : KNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDA                                                           
         :                                                                                                                          
 1k23(B) : KNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDA                                                           
           ______________________________________________________________                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.6
Translation
(A) 		-1.9
Closure
(%) 		96.5
Bending Residues
( green ) 		  186 - 197
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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