Mta/sah Nucleosidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mta/sah Nucleosidase
  Conformer 1
(PDB) 		1jys (A)
  Conformer 2
(PDB) 		1nc3 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 129 0.81   46 - 59   71 - 128   135 - 141   145 - 194
2 60 0.72   15 - 44   60 - 70   129 - 134   142 - 144   218 - 227

Sequence


           _____________________________________________44_____________59_________70_______________________________________________ 
 1jys(A) : ***MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPA 
         :                                                                                                                          
 1nc3(A) : EFSMKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPA 
           _____________________________________________44_____________59_________70_______________________________________________ 

           ______126___________140_144_______________________________________________194______________________________________      
 1jys(A) : GFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQ----sFDEFLAVAAKQSSLMVESLVQKLA**      
         :                                                                                                                          
 1nc3(A) : GFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG      
           ______126___________140_144_______________________________________________194______________________________________      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.6
Translation
(A) 		0.1
Closure
(%) 		99.9
Bending Residues
( green ) 		  44 - 46
  59 - 60
  70 - 71
  126 - 135
  140 - 142
  144 - 145
  194 - 218
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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