Nad-Dependent Alcohol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Dependent Alcohol Dehydrogenase
  Conformer 1
(PDB) 		3i4c (D)
  Conformer 2
(PDB) 		1r37 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 175 1.09   96 - 117   155 - 297   303 - 306   308 - 313
2 148 0.82   3 - 95   118 - 154   298 - 302   307 - 307   314 - 345

Sequence


           _____________________________________________________________________________________________95___________________117___ 
 3i4c(D) : MRAVRL------lSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMR--------iVEDLGVKLPVTLGHEIAGKIEEVG-eVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDSPRWLGI 
         :                                                                                                                          
 1r37(B) : MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI 
           _____________________________________________________________________________________________95___________________117___ 

           _______________________________154______________________________________________________________________________________ 
 3i4c(D) : NFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKG 
         :                                                                                                                          
 1r37(B) : NFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKG 
           _______________________________154______________________________________________________________________________________ 

           ______________________________________________________297__302_306____313__________________________________              
 3i4c(D) : VDAVIDLNYSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLEN-----rQVLIP              
         :                                                                                                                          
 1r37(B) : VDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP              
           ______________________________________________________297__302_306____313__________________________________              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.3
Translation
(A) 		0.5
Closure
(%) 		55.0
Bending Residues
( green ) 		  95 - 96
  117 - 118
  154 - 155
  297 - 298
  302 - 303
  306 - 308
  313 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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