Nicotinamide Nucleotide Transhydrogenase, Subunit Alpha 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nicotinamide Nucleotide Transhydrogenase, Subunit Alpha 1
  Conformer 1
(PDB) 		1l7e (C)
  Conformer 2
(PDB) 		1l7d (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 187 0.58   803 - 940   1128 - 1176
2 161 0.53   941 - 1127

Sequence


           ________________________________________________________________________________________________________________________ 
 1l7e(C) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 
         :                                                                                                                          
 1l7d(B) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 
           ________________________________________________________________________________________________________________________ 

           _________________940____________________________________________________________________________________________________ 
 1l7e(C) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI-kQAEAVLKELVKTDIAITTA 
         :                                                                                                                          
 1l7d(B) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITkQAEAVLKELVKTDIAITTA 
           _________________540____________________________________________________________________________________________________ 

           __________________________________________________________1127________________________________________________________   
 1l7e(C) : LIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPAL****   
         :                                                                                                                          
 1l7d(B) : LIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGTCVTRDGAIVHPALTGQG   
           ___________________________________________________________727________________________________________________________   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.0
Translation
(A) 		-0.1
Closure
(%) 		28.7
Bending Residues
( green ) 		  940 - 941
  1127 - 1128
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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