Nicotinamide Nucleotide Transhydrogenase, Subunit Alpha 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nicotinamide Nucleotide Transhydrogenase, Subunit Alpha 1
  Conformer 1
(PDB) 		1l7d (A)
  Conformer 2
(PDB) 		2oo5 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 188 0.77   3 - 139   141 - 141   326 - 375
2 162 1.03   140 - 140   142 - 325

Sequence


           ________________________________________________________________________________________________________________________ 
 1l7d(A) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 
         :                                                                                                                          
 2oo5(B) : MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAY 
           ________________________________________________________________________________________________________________________ 

           ________________139_____________________________________________________________________________________________________ 
 1l7d(A) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITV------------------- 
         :                                                                                                                          
 2oo5(B) : AMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 
           ________________139_____________________________________________________________________________________________________ 

           __________________________________________________________________________________325___________________________________ 
 1l7d(A) : ----kKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLED 
         :                                                                                                                          
 2oo5(B) : EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLED 
           __________________________________________________________________________________325___________________________________ 

           ____________________                                                                                                     
 1l7d(A) : ETVSGTCVTRDGAIVHP***                                                                                                     
         :                                                                                                                          
 2oo5(B) : ETVSGTCVTRDGAIVHPALT                                                                                                     
           ____________________                                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.4
Translation
(A) 		0.4
Closure
(%) 		91.1
Bending Residues
( green ) 		  139 - 142
  325 - 326
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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