Periplasmic Binding Protein/laci Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Periplasmic Binding Protein/laci Transcriptional Regulator
  Conformer 1
(PDB)
5xss (X)
  Conformer 2
(PDB)
5xsd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 143 2.52   116 - 250   280 - 287
2 98 0.8   16 - 115   251 - 279

Sequence


           ___________________________________________________________________________________________________115__________________ 
 5xss(X) : KPKIVLISHIKTNPYWLDIKAGAERAAKERGAVVEFLGPTTASTEDGLKLFDMATSAKVSGIITYVQEEGQYKKKINSAMEKGIPVVTIDSDEEDSNRIAYVGTDNVLAGQVAGKEMVKQ 
         :                                                                                                                          
 5xsd(A) : KPKIVLISHIKTNPYWLDIKAGAERAAKERGAVVEFL---------------------vSGIITYV-----yKKKINSAMEKGIPVVTIASDEEDSNRIAYVGTDNVLAGQVAGKEMVKQ 
           ___________________________________________________________________________________________________115__________________ 

           __________________________________________________________________________________________________________________250___ 
 5xss(X) : IGTSGNVAIVMGGKNVKNQKERVEGFTQYIKSNSNLKIVDTDSSDAMLLEAEIITRKILNRNDNINALFCTSALDGIGAARAVKDLNYKDRVKIICFDDLDDTLSNIRNGLVSATIVQKS 
         :                                                                                                                          
 5xsd(A) : IGTSGNVAIVMGGKNVKNQKERVEGFTQYIKSNSNLKIVDTDSSDAMLLEAEIITRKILNRNDNINALFCTSALDGIGAARAVKDLNYKDRVKIICFDDLDDTLSNIRNGLVSATIVQKS 
           __________________________________________________________________________________________________________________250___ 

           ________________272_________________                                                                                     
 5xss(X) : NEMGYRAVNIIMDKIEGKS---sLIDVNVINKSD**                                                                                     
         :                                                                                                                          
 5xsd(A) : NEMGYRAVNIIMDKIEGKSNKkSLIDVNVINKSDVD                                                                                     
           ________________272_________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
57.6
Translation
(A)
0.4
Closure
(%)
33.4
Bending Residues
( green )
  115 - 116
  250 - 252
  272 - 280
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download