Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoenolpyruvate Carboxykinase
  Conformer 1
(PDB) 		1ii2 (A)
  Conformer 2
(PDB) 		1oen  
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 325 2.47   6 - 209   211 - 213   227 - 327   382 - 402
2 164 2.37   210 - 210   214 - 226   328 - 381   403 - 515

Sequence


           ________________________________________________________________________________________________________________________ 
 1ii2(A) : ******************PPTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDW-----GKVNMK-LSEESFARVRKIAKEFLDTREHLFVVDCF 
         :                                                                                                                          
 1oen    : GLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKR-LFVVDAF 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________________209_213__ 
 1ii2(A) : AGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSIP--GLTSTTCVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGD 
         :                                                                                                                          
 1oen    : CGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF-KPDFIVMNGAKC-TNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEAGD 
           _______________________________________________________________________________________________________________236_240__ 

           ________226___________________________________________________________________________________________________327_______ 
 1ii2(A) : VTVFFGLSGTGKTTLSADPHRNLIGDDEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLSHIEGALSK-AIAGHPKNVIFLT 
         :                                                                                                                          
 1oen    : VAVFFGLSGSGKTTLSTDPARRLIGDDEHGWDDDGVFNFEGGSYAKTIKLSKEAEPEIYAAIRRDALLEN-VTVRAGGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLT 
           ________253___________________________________________________________________________________________________354_______ 

           ____________________________________________381__________________402____________________________________________________ 
 1ii2(A) : NDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEEY 
         :                                                                                                                          
 1oen    : ADAFGVLPPVSRLTADQTQYHFLSGFTAAA---------ApTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGT-----GKRISAADTRAIIDAILNGSLDNAETFTL 
           ____________________________________________407__________________428____________________________________________________ 

           _____________________________________________________________________                                                    
 1ii2(A) : PGWGLHIPKYVAKVPEHLLNPRKAWKDVRQFNETSKELVAMFQESFSARFAAKASQEMKSAVPRYVEFA                                                    
         :                                                                                                                          
 1oen    : PMFNLAIPTELPGVDTGILDPRNTYaG---WQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPAL****                                                    
           _____________________________________________________________________                                                    

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.9
Translation
(A) 		0.4
Closure
(%) 		98.9
Bending Residues
( green ) 		  209 - 211
  213 - 214
  226 - 227
  327 - 328
  381 - 382
  402 - 403
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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