Probable Aspartokinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Aspartokinase
  Conformer 1
(PDB) 		3c1n (A)
  Conformer 2
(PDB) 		3c20 (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 267 0.57   6 - 206   211 - 234   251 - 260   273 - 308
2 183 1.0   207 - 210   235 - 250   261 - 272   309 - 465

Sequence


           ________________________________________________________________________________________________________________________ 
 3c1n(A) : TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAI-sEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKS 
         :                                                                                                                          
 3c20(A) : TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________195____________________________________234_______ 
 3c1n(A) : RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPR 
         :                                                                                                                          
 3c20(A) : RDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPR 
           _______________________________________________________________________195____________________________________234_______ 

           ______250_______260_______270___________________________________308_____________________________________________________ 
 3c1n(A) : LVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM---dSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI 
         :                                                                                                                          
 3c20(A) : LVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI 
           ______250_______260_______270___________________________________308_____________________________________________________ 

           _________________________________________________________________________________________________________                
 3c1n(A) : SLVVSEEDVDKALKALKREFGD--lNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE*                
         :                                                                                                                          
 3c20(A) : SLVVSEEDVDKALKALKREFGDsFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK                
           _________________________________________________________________________________________________________                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.3
Translation
(A) 		-0.1
Closure
(%) 		11.5
Bending Residues
( green ) 		  195 - 212
  234 - 235
  250 - 251
  260 - 261
  270 - 277
  308 - 309
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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