Ribosome Maturation Factor Rimm

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ribosome Maturation Factor Rimm
  Conformer 1
(PDB) 		3a1p (A)
  Conformer 2
(PDB) 		2dyi (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 86 0.47   4 - 89
2 71 2.9   90 - 160

Sequence


           ___________________________________________________________________________________85___________________________________ 
 3a1p(A) : *RLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDV 
         :                                                                                                                          
 2dyi(A) : MRLVEIGRFGAPYALKGGLRFRGEPVVLHLERVYVEGHGWRAIEDLYRVGEELVVHLAGVTDRTLAEALVGLRVYAEVADLPPLEEGRYYYFALIGLPVYVEGRQVGEVVDILDAGAQDV 
           ___________________________________________________________________________________85___________________________________ 

           __________________________________________                                                                               
 3a1p(A) : LIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGLFD                                                                               
         :                                                                                                                          
 2dyi(A) : LIIRGVGERLRDRAERLVPLQAPYVRVEEGSIHVDPIPGLFD                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.8
Translation
(A) 		-0.4
Closure
(%) 		83.6
Bending Residues
( green ) 		  85 - 90
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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