Rubisco Operon Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Rubisco Operon Transcriptional Regulator
  Conformer 1
(PDB) 		5y2v (A)
  Conformer 2
(PDB) 		5y2w (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 108 0.64   161 - 268
2 94 0.74   94 - 160   269 - 295

Sequence


           ________________________________________________________________________________________________________________________ 
 5y2v(A) : HHMQATLHQLKVFEATARHGSFTRAAEELYITQPTVSSQIKQLSKTVGLPLFEQIGKRLYLTEAGQELLVTCQDIFQRLDNFAMKVADIKGTKQGRLRLAVITTAKYFIPRLLGEFIQKY 
         :                                                                                                                          
 5y2w(A) : *********************************************************************************************QGRLRLAVITTAKYFIPRLLGEFIQKY 
           ________________________________________________________________________________________________________________________ 

           _______________________________________160______________________________________________________________________________ 
 5y2v(A) : PGIEVSLKVTNHEQIRHRMQNNEDDLYIVSEPPEEIDLNYQPFLDNPLVVIARRDHPLAGKSNIPITALNDEAFIMREKGSGTRLAVQNLFHRHYVDVRVRLELGSNEAIKQAIAGGMGI 
         :                                                                                                                          
 5y2w(A) : PGIEVSLKVTNHEQIRHRMQNNEDDLYIVSEPPEEIDLNYQPFLDNPLVVIARRDHPLAGKSNIPITALNDEAFIMREKGSGTRLAVQNLFHRHYVDVRVRLELGSNEAIKQAIAGGMGI 
           _______________________________________160______________________________________________________________________________ 

           ___________________________268__________________________________                                                         
 5y2v(A) : SVLSQHTLVSEGARSELTILDIDEFPIKRRWYVANLAGKQLSVITQTFLDYLMAVTKNMPAPFA                                                         
         :                                                                                                                          
 5y2w(A) : SVLSQHTLVSEGARSELTILDIDEFPIKRRWYVANLAGKQLSVITQTFLDYLMAVTKNMPA***                                                         
           ___________________________268__________________________________                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.4
Translation
(A) 		0.0
Closure
(%) 		98.9
Bending Residues
( green ) 		  160 - 163
  268 - 269
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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