Saccharopine Dehydrogenase, Nad+, L-Lysine- Forming

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Saccharopine Dehydrogenase, Nad+, L-Lysine- Forming
  Conformer 1
(PDB) 		2qrj (A)
  Conformer 2
(PDB) 		2qrl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 191 0.46   134 - 170   173 - 326
2 170 0.39   5 - 133   171 - 172   327 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 2qrj(A) : AVTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPRDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLE 
         :                                                                                                                          
 2qrl(A) : AVTLHLRAETKPLEARAALTPTTVKKLIAKGFKIYVEDSPQSTFNINEYRQAGAIIVPAGSWKTAPRDRIIIGLKEMPETDTFPLVHEHIQFAHCYKDQAGWQNVLMRFIKGHGTLYDLE 
           ________________________________________________________________________________________________________________________ 

           ________133__________________________________170________________________________________________________________________ 
 2qrj(A) : FLENDQGRRVAAFGFYAGFAGAALGVRDWAFKQTHSDDEDLPAVSPYPNEKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQ 
         :                                                                                                                          
 2qrl(A) : FLENDQGRRVAAFGFYAGFAGAALGVRDWAFKQTHSDDEDLPAVSPYPNEKALVKDVTKDYKEALATGARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQ 
           ________133__________________________________170________________________________________________________________________ 

           _________________________________________________________________________________326____________________________________ 
 2qrj(A) : ADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELLPQRKTAPVWVRAKKLFDR 
         :                                                                                                                          
 2qrl(A) : ADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVSADTTNPHNPIPIYTVATVFNKPTVLVPTTAGPKLSVISIDHLPSLLPREASEFFSHDLLPSLELLPQRKTAPVWVRAKKLFDR 
           _________________________________________________________________________________326____________________________________ 

           ___________                                                                                                              
 2qrj(A) : HCARV******                                                                                                              
         :                                                                                                                          
 2qrl(A) : HCARVKRSSRL                                                                                                              
           ___________                                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.2
Translation
(A) 		0.4
Closure
(%) 		75.1
Bending Residues
( green ) 		  133 - 134
  170 - 178
  326 - 327
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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