Small-Conductance Mechanosensitive Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Small-Conductance Mechanosensitive Channel
  Conformer 1
(PDB) 		2oau (A)
  Conformer 2
(PDB) 		2vv5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 22 0.85   94 - 115
2 65 0.96   29 - 93
3 163 0.9   116 - 278

Sequence


           ___________________________________________________________________93___________________115_____________________________ 
 2oau(A) : **YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGT 
         :                                                                                                                          
 2vv5(A) : LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGT 
           ___________________________________________________________________93___________________115_____________________________ 

           ________________________________________________________________________________________________________________________ 
 2oau(A) : VLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAA 
         :                                                                                                                          
 2vv5(A) : VLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAA 
           ________________________________________________________________________________________________________________________ 

           ________________                                                                                                         
 2oau(A) : GISFPYPQMDVNFKRV                                                                                                         
         :                                                                                                                          
 2vv5(A) : GISFPYPQMDVNFKRV                                                                                                         
           ________________                                                                                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		54.4
Translation
(A) 		0.2
Closure
(%) 		63.3
Bending Residues
( green ) 		  93 - 94
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		35.4
Translation
(A) 		1.3
Closure
(%) 		29.5
Bending Residues
( green ) 		  115 - 116
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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