Spectrin Alpha Chain, Brain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Spectrin Alpha Chain, Brain
  Conformer 1
(PDB) 		1u4q (A)
  Conformer 2
(PDB) 		1u4q (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 124 0.74   1770 - 1877   1938 - 1953
2 101 0.86   1668 - 1768
3 83 0.77   1878 - 1937   1954 - 1976

Sequence


           _______________________________________________________________________________________________________1768_____________ 
 1u4q(A) : ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 
         :                                                                                                                          
 1u4q(B) : ***QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 
           _______________________________________________________________________________________________________1768_____________ 

           ____________________________________________________________________________________________1877________________________ 
 1u4q(A) : ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 
         :                                                                                                                          
 1u4q(B) : ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 
           ____________________________________________________________________________________________1877________________________ 

           ________________________________1937__________1951______________________________                                         
 1u4q(A) : DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE**                                         
         :                                                                                                                          
 1u4q(B) : DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS                                         
           ________________________________1937__________1951______________________________                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.6
Translation
(A) 		0.6
Closure
(%) 		38.3
Bending Residues
( green ) 		  1768 - 1770
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		9.3
Translation
(A) 		-0.2
Closure
(%) 		98.6
Bending Residues
( green ) 		  1877 - 1878
  1937 - 1938
  1951 - 1954
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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