Transcriptional Regulator (Ntrc Family)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator (Ntrc Family)
  Conformer 1
(PDB) 		1ny5 (B)
  Conformer 2
(PDB) 		4l4u (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 200 1.86   5 - 140   146 - 162   174 - 196   236 - 244   271 - 274   289 - 292   298 - 305
2 159 0.9   141 - 145   163 - 173   210 - 235   245 - 270   275 - 288   293 - 297   306 - 380

Sequence


           ________________________________________________________________________________________________________________________ 
 1ny5(B) : ********MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 
         :                                                                                                                          
 4l4u(A) : GLVPRGSHMNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTI 
           ________________________________________________________________________________________________________________________ 

           _________________132__________145____152_________________________________________196____________________________________ 
 1ny5(B) : NKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADG 
         :                                                                                                                          
 4l4u(A) : NKAIEHRKLRKENELLRREKDLKEe-YVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKSSDRSKEPFVALNVASIPRDIFEAELFGYEKGA---aVSSKEGFFELADG 
           _________________132__________145____152_________________________________________196____________________________________ 

           235______244_______________________270_274___________288_292__297_____305_______________________________________________ 
 1ny5(B) : GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW 
         :                                                                                                                          
 4l4u(A) : GTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPW 
           235______244_______________________270_274___________288_292__297_____305_______________________________________________ 

           _________________________________                                                                                        
 1ny5(B) : YGNVRELKNVIERAVLFSEGKFIDRGELSCLVN                                                                                        
         :                                                                                                                          
 4l4u(A) : YGNVRELKNVIERAVLFSEGKFIDRGELSCLV*                                                                                        
           _________________________________                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.2
Translation
(A) 		-0.4
Closure
(%) 		79.0
Bending Residues
( green ) 		  132 - 141
  145 - 146
  152 - 174
  196 - 210
  235 - 236
  244 - 245
  270 - 271
  274 - 275
  288 - 289
  292 - 293
  297 - 298
  305 - 306
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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